Crohn’s Disease Complications

Crohn’s disease can lead to several different complications within the digestive tract, caused largely by the inflammation and injury to the bowel wall that characterize the disease.
But Crohn’s disease — and possibly certain treatments for it — can also lead to complications in other areas of the body, which may be related either to inflammation or to malnutrition caused by the disease.
Different Types of Intestinal Complications
The following complications in the intestines can develop because of Crohn’s disease:
Bowel Obstruction (Blockage) Scarring and inflammation from Crohn’s disease that lead to areas of scar tissue buildup — known as strictures — can constrict an area of the intestines and block normal digestion. This is more common in the small intestine than in the large intestine (colon). (1)
Symptoms of a blockage often include a reduced appetite, severe abdominal cramps, nausea, bloating, abdominal distension, and vomiting. Surgery may be required to remove the obstruction.
Anal Fissure This is a tear or crack (usually resembling a paper cut) in the skin lining the anus or around the anus.
Fissures can cause mild to severe rectal pain and bleeding, especially during and right after bowel movements. A fissure may become infected or develop into a perianal fistula. (1)
Fistula A fistula is an abnormal channel or connection that develops between two areas of the body. In Crohn’s disease, a fistula usually develops from an ulcer, or sore, in the intestines that deepens into a tract (channel).
A fistula may connect two different areas of the intestines, or it may connect part of the intestines with the bladder, vagina, or outer skin. Fistulas can interfere with nutrient absorption and often require surgery to repair, especially if they’re large or numerous. They can also get infected and lead to abscesses.
About 30 percent of people with Crohn’s disease develop fistulas. (2)
Abscess An abscess is a pocket of pus caused by a bacterial infection. It may develop in or around a fistula but can also occur separately from fistulas, including deep in the abdominal cavity, where it would not be visible at all. Abscesses may cause swelling, pain, and fever.
An abscess that forms in the intestinal wall may cause it to bulge, and abscesses around the anus may be visible and look like boils. (2)
Depending on its location and severity, an abscess may be drained by using a needle or through surgery. Antibiotics are also often used to help clear up the infection.
Malnutrition A variety of factors in Crohn’s disease may make it difficult to consume or absorb enough nutrients. These include difficulty eating due to pain or diarrhea or malabsorption in the intestines due to extensive inflammation and injury, certain medications, or surgery.
Medical treatment to replace nutrients is usually successful at treating malnutrition. (3)
Intestinal Infection Overgrowth of bacteria in the small intestine can cause abdominal pain, gas, bloating, and diarrhea.
Having Crohn’s disease raises the likelihood of developing a C. difficile infection. This type of infection often causes severe diarrhea. (4)
Antibiotics are used to treat intestinal infections.
Toxic Megacolon This is a serious complication in which deep inflammation in the colon leads it to become enlarged and paralyzed.
A colon with toxic megacolon can rupture, which is a life-threatening emergency that requires surgery. (5)
Colon Cancer Having Crohn’s disease increases your risk of developing colorectal cancer. This risk is highest if you’ve had the disease for at least eight years or have large areas of your colon affected by it. (6)
Because of this increased risk, ask your doctor if you should have a colonoscopy earlier or more frequently than general guidelines recommend.
Complications Outside the Intestines
Less commonly, Crohn’s disease complications can affect other areas of the body. These complications include:
Mouth Problems Both canker sores and yeast infections in your mouth are common problems in people with Crohn’s disease. (1)
Joint Problems Inflammation due to Crohn’s disease can also cause arthritis (stiffness in your joints). (3)
You may also be at risk for clubbing of your fingers and toes (abnormal widening at the ends of these extremities). (7)
Skin Disorders People with Crohn’s disease may develop red, knot-like swellings and other skin lesions, which can spread from areas close to your colon to as far away as your arms and legs.
Having Crohn’s disease also increases your risk of developing psoriasis (patches of red, itchy, scaly skin). (7)
Liver Problems For some people with Crohn’s, the liver can become damaged or inflamed. While most liver damage is reversible, about 5 percent of people living with IBD have serious liver disease. (8)
Anemia It’s common for Crohn’s patients to develop anemia as a result of low iron and vitamin B12 levels due to malnutrition. (1)
Blood Clots Having Crohn’s disease increases your risk of developing blood clots in your legs, as well as developing a pulmonary embolism, in which a clot travels from your legs to your lungs. (9)
Eye Problems Corticosteroids — drugs that are sometimes used to control inflammation in Crohn’s disease — can increase your risk of developing cataracts (clouding of the lens of the eye) or glaucoma (a group of conditions that damage the optic nerve). (10)
Crohn’s disease itself can also lead to inflammation in the eyes. (1)
Bone Issues Both Crohn’s disease and corticosteroids can contribute to osteoporosis (weakened, porous bones) and osteopenia (reduced bone density), leading to a higher risk of fractures.
Between 30 and 50 percent of people who take corticosteroids long term go on to develop osteoporosis. (11)
Kidney Stones and Gallstones Both of these conditions are more common in people with Crohn’s disease. (9,12)
Weight Issues For some people, symptoms of Crohn’s like nausea and abdominal pain can lead to loss of appetite and weight loss. Side effects of certain medication can also lead to weight loss, while others can lead to weight gain. (13)
Delayed Growth Crohn’s disease can limit physical growth and development in children. (1)
Emotional Problems Fear of pain and potentially disruptive or embarrassing symptoms can lead to social isolation and a higher risk of developing depression or anxiety. (14)

Ira Daniel Breite, MD
Medical Reviewer
Ira Daniel Breite, MD, is a board-certified internist and gastroenterologist. He is an associate professor at the Icahn School of Medicine at Mount Sinai, where he also sees patients and helps run an ambulatory surgery center.
Dr. Breite divides his time between technical procedures, reading about new topics, and helping patients with some of their most intimate problems. He finds the deepest fulfillment in the long-term relationships he develops and is thrilled when a patient with irritable bowel syndrome or inflammatory bowel disease improves on the regimen he worked with them to create.
Breite went to Albert Einstein College of Medicine for medical school, followed by a residency at NYU and Bellevue Hospital and a gastroenterology fellowship at Memorial Sloan Kettering Cancer Center. Working in city hospitals helped him become resourceful and taught him how to interact with people from different backgrounds.
Quinn Phillips
Author
A freelance health writer and editor based in Wisconsin, Quinn Phillips has a degree in government from Harvard University. He writes on a variety of topics, but is especially interested in the intersection of health and public policy. Phillips has written for various publications and websites, such as Diabetes Self-Management, Practical Diabetology, and Gluten-Free Living, among others.
- Crohn’s Disease: Symptoms and Causes. Mayo Clinic. August 6, 2022.
- Intestinal Complications [PDF]. Crohn’s & Colitis Foundation. January 2015.
- Extraintestinal Complications of IBD. Crohn’s & Colitis Foundation.
- Clostridium Difficile “C. Difficile” Infection (CDI). American College of Gastroenterology. April 2021.
- Toxic Megacolon. Johns Hopkins Medicine.
- The Risk of Colorectal Cancer in Crohn’s Disease and Ulcerative Colitis Patients. Crohn’s & Colitis Foundation.
- Skin Complications [PDF]. Crohn’s & Colitis Foundation. January 2015.
- Liver Complications [PDF]. Crohn’s & Colitis Foundation. January 2015.
- The Facts About Inflammatory Bowel Diseases [PDF]. Crohn’s & Colitis Foundation. November 2014.
- Eye Complications [PDF]. Crohn’s & Colitis Foundation. January 2015.
- Bone Loss [PDF]. Crohn’s & Colitis Foundation. January 2015.
- Kidney Disorders [PDF]. Crohn’s & Colitis Foundation. January 2015.
- Malnutrition and IBD. Crohn’s & Colitis Foundation.
- Depression and Anxiety. Crohn’s & Colitis Foundation.

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